diff --git a/anatomical_map.json b/anatomical_map.json index 197378e..e6e4a7d 100644 --- a/anatomical_map.json +++ b/anatomical_map.json @@ -176,8 +176,8 @@ "name": "cardiac muscle of left ventricle" }, "cardio_24": { - "term": "UBERON:0001986", - "name": "endothelium" + "term": "UBERON:0015129", + "name": "Epicardial Fat" }, "cardio_25": { "term": "UBERON:0003381", @@ -491,10 +491,6 @@ "term": "UBERON:0001238", "name": "lamina propria of small intestine" }, - "digestive_40": { - "term": "UBERON:0001902", - "name": "epithelium of small intestine" - }, "digestive_41": { "term": "UBERON:0018543", "name": "lumen of intestine" @@ -680,8 +676,80 @@ "name": "portal vein" }, "digestive_89": { - "term": "ILX:0741796", - "name": "deep transverse perineal muscle" + "term": "ILX:0795342", + "name": "upper part of the anal canal" + }, + "digestive_90": { + "term": "UBERON:0001902", + "name": "epithelium of small intestine" + }, + "digestive_91": { + "term": "ILX:0771006", + "name": "wall of duodenum" + }, + "digestive_92": { + "term": "UBERON:0014390", + "name": "muscle layer of ileum" + }, + "digestive_93": { + "term": "UBERON:0012377", + "name": "muscle layer of jejunum" + }, + "digestive_94": { + "term": "ILX:0773238", + "name": "Muscle layer of transverse colon" + }, + "digestive_95": { + "term": "ILX:0795341", + "name": "muscle layer of proximal colon" + }, + "digestive_96": { + "term": "UBERON:0005436", + "name": "common hepatic artery" + }, + "digestive_97": { + "term": "UBERON:0011198", + "name": "muscle layer of large intestine" + }, + "digestive_98": { + "term": "UBERON:0001278", + "name": "epithelium of large intestine" + }, + "digestive_99": { + "term": "UBERON:0004222", + "name": "stomach smooth muscle" + }, + "digestive_100": { + "term": "UBERON:8410061", + "name": "Longitudinal Muscle Layer of Colon" + }, + "digestive_101": { + "term": "UBERON:0012419", + "name": "Taenia coli" + }, + "digestive_102": { + "term": "UBERON:0003832", + "name": "esophagus muscle" + }, + "digestive_103": { + "term": "UBERON:0004239", + "name": "small intestine smooth muscle" + }, + "digestive_104": { + "term": "UBERON:0018111", + "name": "muscle layer of rectum" + }, + "digestive_105": { + "term": "UBERON:0003354", + "name": "anal canal epithelium" + }, + "digestive_106": { + "term": "UBERON:0012490", + "name": "muscle layer of anal canal" + }, + "digestive_107": { + "term": "UBERON:0015716", + "name": "epithelium of rectum" }, "reproductive_1": { "term": "UBERON:0000995", @@ -1200,7 +1268,7 @@ "name": "Barrington's nucleus" }, "brain_14": { - "term": "UBERON:0003040", + "term": "ILX:0793626", "name": "Ventrolateral Periaqueductal Gray" }, "brain_15": { @@ -1339,6 +1407,26 @@ "term": "UBERON:0002141", "name": "Oculomotor nucleus" }, + "brain_52-1": { + "term": "UBERON:0001717", + "name": "spinal nucleus of trigeminal nerve" + }, + "brain_54": { + "term": "UBERON:0002945", + "name": "ventral posteromedial nucleus of thalamus" + }, + "brain_55": { + "term": "UBERON:0002866", + "name": "caudal part of spinal trigeminal nucleus" + }, + "brain_56": { + "term": "UBERON:0002873", + "name": "interpolar part of spinal trigeminal nucleus" + }, + "brain_57": { + "term": "UBERON:0002591", + "name": "oral part of spinal trigeminal nucleus" + }, "bolser_2": { "term": "ILX:0738309", "name": "Internal branch of inferior laryngeal nerve" @@ -1659,6 +1747,38 @@ "term": "ILX:0795060", "name": "eccrine sweat gland of the face" }, + "label_28": { + "term": "UBERON:0001456", + "name": "face" + }, + "label_29": { + "term": "UBERON:0000033", + "name": "head" + }, + "label_30": { + "term": "UBERON:0000167", + "name": "oral cavity" + }, + "label_31": { + "term": "UBERON:0002075", + "name": "viscus" + }, + "label_32": { + "term": "UBERON:0001484", + "name": "articular capsule" + }, + "label_33": { + "term": "UBERON:0002097", + "name": "skin of body" + }, + "label_34": { + "term": "UBERON:0001015", + "name": "musculature" + }, + "label_35": { + "term": "UBERON:0001630", + "name": "muscle organ" + }, "vagus_n": { "term": "UBERON:0001759", "name": "Vagus Nerve" diff --git a/connectivity_terms.json b/connectivity_terms.json index 40fcf7b..47148e9 100644 --- a/connectivity_terms.json +++ b/connectivity_terms.json @@ -1,21 +1,4 @@ [ - { - "id": [ - "UBERON:0007240", - [ - "UBERON:0000947" - ] - ], - "name": "tunica adventitia of artery/aorta", - "aliases": [ - [ - "UBERON:0007240", - [ - "UBERON:0001496" - ] - ] - ] - }, { "id": [ "ILX:0793234", @@ -23,10 +6,6 @@ ], "name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion", "aliases": [ - [ - "ILX:0793363", - [] - ], [ "ILX:0739241", [] @@ -126,10 +105,6 @@ [ "ILX:0795013", [] - ], - [ - "ILX:0795017", - [] ] ] }, @@ -231,19 +206,27 @@ ] ], [ - "ILX:0795012", + "UBERON:0018676", [] ], [ - "ILX:0795014", + "UBERON:0011926", [] ], [ - "UBERON:0018676", + "ILX:0795513", [] ], [ - "UBERON:0011926", + "ILX:0795514", + [] + ], + [ + "ILX:0795515", + [] + ], + [ + "ILX:0795516", [] ] ] @@ -491,18 +474,6 @@ ] ] }, - { - "id": [ - "UBERON:0002108", - [] - ], - "aliases": [ - [ - "ILX:0793735", - [] - ] - ] - }, { "id": [ "UBERON:0000988", @@ -1301,10 +1272,6 @@ [ "ILX:0786788", [] - ], - [ - "ILX:0785947", - [] ] ] }, @@ -1399,10 +1366,6 @@ [ "ILX:0786477", [] - ], - [ - "ILX:0787285", - [] ] ] }, @@ -1515,10 +1478,6 @@ [ "UBERON:0001279", [] - ], - [ - "CL:1000488", - [] ] ] }, @@ -1545,10 +1504,6 @@ "UBERON:0001172", [] ], - [ - "CL:0000182", - [] - ], [ "ILX:0795016", [] @@ -1592,7 +1547,7 @@ [] ], [ - "CL:0009094", + "UBERON:0001639", [] ] ] @@ -1605,7 +1560,7 @@ "name": "T1 segment of thoracic spinal cord", "aliases": [ [ - "ILX:0792474", + "ILX:0795493", [] ] ] @@ -1683,173 +1638,577 @@ [] ], [ - "ILX:0795036", + "ILX:0795045", [] ], [ - "ILX:0795033", + "ILX:0795041", [] ], [ - "ILX:0795037", + "ILX:0795046", [] ], [ - "ILX:0795035", + "ILX:0795043", [] ], [ - "ILX:0795032", + "ILX:0795047", [] ], [ - "ILX:0795038", + "ILX:0795042", [] ], [ - "ILX:0795039", + "ILX:0795040", [] ], [ - "ILX:0795034", + "ILX:0795023", [] ], [ - "ILX:0795045", + "ILX:0795024", [] ], [ - "ILX:0795041", + "ILX:0795025", [] ], [ - "ILX:0795046", + "ILX:0795031", [] ], [ - "ILX:0795043", + "ILX:0795044", [] - ], + ] + ] + }, + { + "id": [ + "ILX:0793359", + [] + ], + "name": "Thirteenth thoracic dorsal root ganglion", + "aliases": [ [ - "ILX:0795047", + "ILX:0795052", [] ], [ - "ILX:0795042", + "ILX:0795051", [] - ], + ] + ] + }, + { + "id": [ + "UBERON:0001184", + [] + ], + "name": "renal artery", + "aliases": [ [ - "ILX:0795048", + "ILX:0795058", [] ], [ - "ILX:0795040", + "ILX:0795053", [] - ], + ] + ] + }, + { + "id": [ + "ILX:0787528", + [] + ], + "name": "Second sacral nerve", + "aliases": [ [ - "ILX:0795023", + "ILX:0785238", + [] + ] + ] + }, + { + "id": [ + "ILX:0791971", + [] + ], + "name": "Third sacral nerve", + "aliases": [ + [ + "ILX:0788532", + [] + ] + ] + }, + { + "id": [ + "ILX:0792327", + [] + ], + "name": "Fourth sacral nerve", + "aliases": [ + [ + "ILX:0788777", + [] + ] + ] + }, + { + "id": [ + "UBERON:0001155", + [] + ], + "name": "colon", + "aliases": [ + [ + "UBERON:0001156", [] ], [ - "ILX:0795024", + "UBERON:0001157", [] ], [ - "ILX:0795025", + "UBERON:0001158", [] ], [ - "ILX:0795031", + "UBERON:0001159", [] ], [ - "ILX:0795044", + "ILX:0773031", [] ] ] }, { "id": [ - "ILX:0793359", + "ILX:0793558", [] ], - "name": "Thirteenth thoracic dorsal root ganglion", + "name": "Distal stomach", "aliases": [ [ - "ILX:0795052", + "UBERON:0001165", + [] + ] + ] + }, + { + "id": [ + "ILX:0793658", + [] + ], + "name": "Proximal stomach", + "aliases": [ + [ + "UBERON:0005477", [] ], [ - "ILX:0795051", + "UBERON:0001161", [] ] ] }, { "id": [ - "ILX:0786163", + "ILX:0793656", [] ], - "name": "ventral root of the eighth cervical spinal cord segment", + "name": "myenteric nerve plexus of stomach", "aliases": [ [ - "UBERON:0014634", + "ILX:0795344", [] ] ] }, { "id": [ - "UBERON:0001184", + "ILX:0795492", [] ], - "name": "renal artery", + "name": "posterior root of thirteenth thoracic nerve", "aliases": [ [ - "ILX:0795058", + "ILX:0795050", [] ], [ - "ILX:0795053", + "ILX:0795049", [] ] ] }, { "id": [ - "ILX:0787528", + "UBERON:0018680", [] ], - "name": "Second sacral nerve", + "name": "greater splanchnic nerve", "aliases": [ [ - "ILX:0785238", + "ILX:0796950", [] ] ] }, { "id": [ - "ILX:0791971", + "UBERON:0018681", [] ], - "name": "Third sacral nerve", + "name": "lesser splanchnic nerve", "aliases": [ [ - "ILX:0788532", + "ILX:0796952", [] ] ] }, { "id": [ - "ILX:0792327", + "ILX:0785632", [] ], - "name": "Fourth sacral nerve", + "name": "Posterior root of first thoracic nerve", "aliases": [ [ - "ILX:0788777", + "ILX:0790352", + [] + ] + ] + }, + { + "id": [ + "ILX:0791802", + [] + ], + "name": "Posterior root of second thoracic nerve", + "aliases": [ + [ + "ILX:0784952", + [] + ] + ] + }, + { + "id": [ + "ILX:0789246", + [] + ], + "name": "Posterior root of third thoracic nerve", + "aliases": [ + [ + "ILX:0788815", + [] + ] + ] + }, + { + "id": [ + "ILX:0784605", + [] + ], + "name": "Posterior root of seventh thoracic nerve", + "aliases": [ + [ + "ILX:0788023", + [] + ] + ] + }, + { + "id": [ + "ILX:0787870", + [] + ], + "name": "Posterior root of eight cervical nerve", + "aliases": [ + [ + "ILX:0792093", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006470" + ] + ], + "name": "gray matter of spinal cord/eight cervical spinal cord segment", + "aliases": [ + [ + "ILX:0797431", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006457" + ] + ], + "name": "gray matter of spinal cord/first thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0797432", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006458" + ] + ], + "name": "gray matter of spinal cord/second thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0797433", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006459" + ] + ], + "name": "gray matter of spinal cord/third thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0797434", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006455" + ] + ], + "name": "gray matter of spinal cord/seventh thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0796498", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006456" + ] + ], + "name": "gray matter of spinal cord/eight thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795032", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006465" + ] + ], + "name": "gray matter of spinal cord/ninth thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795033", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006466" + ] + ], + "name": "gray matter of spinal cord/tenth thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795034", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006467" + ] + ], + "name": "gray matter of spinal cord/eleventh thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795035", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006468" + ] + ], + "name": "gray matter of spinal cord/twelfth thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795036", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "ILX:0793357" + ] + ], + "name": "gray matter of spinal cord/thirteenth thoracic spinal cord segment", + "aliases": [ + [ + "ILX:0795037", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006448" + ] + ], + "name": "gray matter of spinal cord/first lumbar spinal cord segment", + "aliases": [ + [ + "ILX:0795038", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002315", + [ + "UBERON:0006450" + ] + ], + "name": "gray matter of spinal cord/second lumbar spinal cord segment", + "aliases": [ + [ + "ILX:0795039", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002844", + [] + ], + "name": "eight cervical dorsal root ganglion", + "aliases": [ + [ + "ILX:0785251", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002845", + [] + ], + "name": "first thoracic dorsal root ganglion", + "aliases": [ + [ + "ILX:0784660", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002846", + [] + ], + "name": "second thoracic dorsal root ganglion", + "aliases": [ + [ + "ILX:0785420", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002847", + [] + ], + "name": "third thoracic dorsal root ganglion", + "aliases": [ + [ + "ILX:0791100", + [] + ] + ] + }, + { + "id": [ + "UBERON:0002850", + [] + ], + "name": "seventh thoracic dorsal root ganglion", + "aliases": [ + [ + "ILX:0785878", + [] + ] + ] + }, + { + "id": [ + "ILX:0793359", + [] + ], + "name": "thirteenth thoracic dorsal root ganglion", + "aliases": [ + [ + "ILX:0795494", [] ] ] diff --git a/manifest.json b/manifest.json index 7944682..cf6adb4 100644 --- a/manifest.json +++ b/manifest.json @@ -3,7 +3,7 @@ "models": "NCBITaxon:10090", "description": "description.json", "properties": "properties.json", - "sckan-version": "sckan-2024-09-21", + "sckan-version": "sckan-2026-02-11", "sources": [ { "id": "whole-mouse", diff --git a/mouse_flatmap.svg b/mouse_flatmap.svg index ff9fc7d..bbaee42 100644 --- a/mouse_flatmap.svg +++ b/mouse_flatmap.svg @@ -690,75 +690,39 @@ .id(S44_T5) - - .id(S44_T6-1) - - .id(S44_T6) - - - - .id(S44_T7-1) - - .id(S44_T7) - - - - .id(S44_T8-1) - - .id(S44_T8) - - - - .id(S44_T9-1) - - .id(S44_T9) - - - - .id(S44_T10-1) - - .id(S44_T10) - - - - .id(S44_T11-1) - - .id(S44_T11) - - - - .id(S44_T12-1) - - .id(S44_T12) - - - - .id(S44_T13_L) - - .id(S44_T13_R) - - .id(S44_T13) - - - - - .id(S44_L1-1) - - .id(S44_L1) - - - - .id(S44_L2-1) - - .id(S44_L2) - - - - .id(S44_L3-1) - - .id(S44_L3) - - + + .id(S44_T6) + + + .id(S44_T7) + + + .id(S44_T8) + + + .id(S44_T9) + + + .id(S44_T10) + + + .id(S44_T11) + + + .id(S44_T12) + + + .id(S44_T13) + + + .id(S44_L1) + + + .id(S44_L2) + + + .id(S44_L3) + .id(S44_L4) @@ -1195,7 +1159,7 @@ .id(S33_S4) - .closed interior id(spinal_32-31) + .id(spinal_32-31) @@ -1245,7 +1209,7 @@ .id(S33_S3) - .closed interior id(spinal_32-30) + .id(spinal_32-30) @@ -1295,7 +1259,7 @@ .id(S33_S2) - .closed interior id(spinal_32-29) + .id(spinal_32-29) @@ -1351,7 +1315,7 @@ .id(S33_S1) - .closed interior id(spinal_32-28) + .id(spinal_32-28) @@ -1416,7 +1380,7 @@ .id(S33_L6) - .closed interior id(spinal_32-27) + .id(spinal_32-27) @@ -1478,7 +1442,7 @@ .id(S33_L5) - .closed interior id(spinal_32-26) + .id(spinal_32-26) @@ -1540,7 +1504,7 @@ .id(S33_L4) - .closed interior id(spinal_32-25) + .id(spinal_32-25) @@ -1596,7 +1560,7 @@ .id(S33_L3) - .closed interior id(spinal_32-24) + .id(spinal_32-24) @@ -1652,7 +1616,7 @@ .id(S33_L2) - .closed interior id(spinal_32-23) + .id(spinal_32-23) @@ -1711,7 +1675,7 @@ .id(S33_L1) - .closed interior id(spinal_32-22) + .id(spinal_32-22) @@ -1764,7 +1728,7 @@ .id(S33_T13) - .closed interior id(spinal_32-21) + .id(spinal_32-21) @@ -1820,7 +1784,7 @@ .id(S33_T12) - .closed interior id(spinal_32-20) + .id(spinal_32-20) @@ -1876,7 +1840,7 @@ .id(S33_T11) - .closed interior id(spinal_32-19) + .id(spinal_32-19) @@ -1929,7 +1893,7 @@ .id(S33_T10) - .closed interior id(spinal_32-18) + .id(spinal_32-18) @@ -1982,7 +1946,7 @@ .id(S33_T9) - .closed interior id(spinal_32-17) + .id(spinal_32-17) @@ -2032,7 +1996,7 @@ .id(S33_T8) - .closed interior id(spinal_32-16) + .id(spinal_32-16) @@ -2085,7 +2049,7 @@ .id(S33_T7) - .closed interior id(spinal_32-15) + .id(spinal_32-15) @@ -2135,7 +2099,7 @@ .id(S33_T6) - .closed interior id(spinal_32-14) + .id(spinal_32-14) @@ -2184,7 +2148,7 @@ .id(S33_T5) - .closed interior id(spinal_32-13) + .id(spinal_32-13) @@ -2233,7 +2197,7 @@ .id(S33_T4) - .closed interior id(spinal_32-12) + .id(spinal_32-12) @@ -2283,7 +2247,7 @@ .id(S33_T3) - .closed interior id(spinal_32-11) + .id(spinal_32-11) @@ -2336,7 +2300,7 @@ .id(S33_T2) - .closed interior id(spinal_32-10) + .id(spinal_32-10) @@ -2395,7 +2359,7 @@ .id(S33_T1) - .closed interior id(spinal_32-9) + .id(spinal_32-9) @@ -2460,7 +2424,7 @@ .id(S33_C8) - .closed interior id(spinal_32-8) + .id(spinal_32-8) @@ -2528,7 +2492,7 @@ .id(S33_C7) - .closed interior id(spinal_32-7) + .id(spinal_32-7) @@ -2590,7 +2554,7 @@ .id(S33_C6) - .closed interior id(spinal_32-6) + .id(spinal_32-6) @@ -2655,7 +2619,7 @@ .id(S33_C5) - .closed interior id(spinal_32-5) + .id(spinal_32-5) @@ -2717,7 +2681,7 @@ .id(S33_C4) - .closed interior id(spinal_32-4) + .id(spinal_32-4) @@ -2773,7 +2737,7 @@ .id(S33_C3) - .closed interior id(spinal_32-3) + .id(spinal_32-3) @@ -2826,7 +2790,7 @@ .id(S33_C2) - .closed interior id(spinal_32-2) + .id(spinal_32-2) @@ -2876,7 +2840,7 @@ .id(S33_C1) - .closed interior id(spinal_32-1) + .id(spinal_32-1) @@ -6951,18 +6915,12 @@ .id(digestive_84-1) - - .id(digestive_85-1) - .id(digestive_86-1) .id(digestive_87-1) - - .id(digestive_88-1) - .id(digestive_17-1) @@ -7012,6 +6970,31 @@ + + + .id(digestive_97-1) + + + .id(ganglion_28-1) + + + .id(ganglion_32-1) + + + .id(digestive_98-1) + + + + + .id(digestive_100-1) + + + .id(ganglion_33-1) + + + .id(digestive_101-1) + + .id(digestive_5-1) @@ -8749,53 +8732,58 @@ esophagus_and_stomach - - Group - - - - - - + + + Group + + + + + + + + + .boundary + + + .invisible divider + + + .invisible divider + + + .invisible divider + + + .invisible divider + + + .invisible divider + + + .region id(digestive_12-1) + + + .region id(digestive_18-1) + + + .region id(digestive_19-1) + + + .region id(digestive_20-1) + + + .region id(digestive_21-1) + + + .region id(digestive_79-1) + - - .boundary - - - .invisible divider - - - .invisible divider - - - .invisible divider - - - .invisible divider - - - .invisible divider + + .id(digestive_91-1) - - .region id(digestive_12-1) - - - .region id(digestive_18-1) - - - .region id(digestive_19-1) - - - .region id(digestive_20-1) - - - .region id(digestive_21-1) - - - .region id(digestive_79-1) - .id(body_8-1) @@ -8819,6 +8807,15 @@ + + .id(digestive_85-1) + + + .id(digestive_88-1) + + + .id(digestive_96-1) + .id(cardio_2-1) @@ -13691,7 +13688,7 @@ .id(brain_34-1) - .id(brain_44-1) + .id(brain_52-1) .id(brain_45-1) @@ -13705,6 +13702,18 @@ .id(brain_51-1) + + .id(brain_54-1) + + + .id(brain_55-1) + + + .id(brain_56-1) + + + .id(brain_57-1) + Labels @@ -13715,39 +13724,21 @@ .id(cardio_3-1) - - .id(cardio_18-1) - .id(cardio_19-1) - - .id(cardio_20-1) - .id(cardio_21-1) - - .id(cardio_22-1) - - - .id(cardio_23-1) - .id(cardio_24-1) - - .id(cardio_25-1) - .id(cardio_27-1) .id(cardio_28-1) - - .id(cardio_28-2) - .id(cardio_28-3) @@ -13763,23 +13754,17 @@ .id(cardio_29-3) - - .id(cardio_29-4) - - .id(cardio_31-1) + .id(cardio_29-4) - .id(cardio_33-1) - - - .id(cardio_34-1) + .id(cardio_28-2) .id(cardio_35-1) - .id(cardio_35-2) + .id(cardio_16-1) .id(cardio_36-1) @@ -14132,9 +14117,6 @@ .id(urinary_9-1) - - .id(urinary_10-1) - .id(urinary_11-1) @@ -14250,36 +14232,6 @@ - - .id(label_5-1) - - - .id(label_6-1) - - - .id(label_7-1) - - - .id(label_8-1) - - - .id(label_9-1) - - - .id(label_10-1) - - - .id(label_11-1) - - - .id(label_12-1) - - - .id(label_13-1) - - - .id(label_23-1) - .id(body_9-1) @@ -14346,6 +14298,66 @@ .id(label_27-1) + + .id(digestive_90-1) + + + .id(digestive_92-1) + + + .id(digestive_93-1) + + + .id(digestive_94-1) + + + .id(digestive_95-1) + + + .id(digestive_99-1) + + + .id(digestive_102-1) + + + .id(digestive_103-1) + + + .id(digestive_104-1) + + + .id(digestive_105-1) + + + .id(digestive_106-1) + + + .id(digestive_107-1) + + + .id(label_28-1) + + + .id(label_29-1) + + + .id(label_30-1) + + + .id(label_31-1) + + + .id(label_32-1) + + + .id(label_33-1) + + + .id(label_34-1) + + + .id(label_35-1) + Ganglia @@ -14436,9 +14448,6 @@ .id(ganglion_5-1) - - .id(ganglion_8-1) - .id(ganglion_9-1) @@ -14487,12 +14496,33 @@ .id(ganglion_25-1) - - .id(ganglion_26-1) - .id(ganglion_27-1) + + .id(ganglion_29-1) + + + .id(ganglion_30-1) + + + .id(ganglion_31-1) + + + .id(ganglion_36-1) + + + .id(ganglion_35-1) + + + .id(ganglion_34-1) + + + .id(ganglion_37-1) + + + .id(ganglion_38-1) + Plexus @@ -14523,9 +14553,6 @@ .id(plexus_14-1) - - .id(plexus_13-1) - .id(plexus_16-1) @@ -14544,6 +14571,15 @@ .id(plexus_19-1) + + .id(plexus_25-1) + + + .id(plexus_24-1) + + + .id(plexus_21-1) + Nodes @@ -15516,6 +15552,18 @@ .id(nasopalatine_c) + + .id(trigeminal_c) + + + .id(vagosymp_c) + + + .id(penile_cavernous_c) + + + .id(cardiac_interganglionic_c) + diff --git a/properties.json b/properties.json index 61bae38..ce3f639 100644 --- a/properties.json +++ b/properties.json @@ -1255,145 +1255,128 @@ "name": "Anterior root of fourth sacral nerve" }, "S44_C1": { - "class": "spinal_44" + "models": "ILX:0784521", + "name": "Posterior root of first cervical nerve" }, "S44_C2": { - "class": "spinal_44" + "models": "ILX:0785587", + "name": "Posterior root of second cervical nerve" }, "S44_C3": { - "class": "spinal_44" + "models": "ILX:0784978", + "name": "Posterior root of third cervical nerve" }, "S44_C4": { - "class": "spinal_44" + "models": "ILX:0788437", + "name": "Posterior root of fourth cervical nerve" }, "S44_C5": { - "class": "spinal_44" + "models": "ILX:0785440", + "name": "Posterior root of fifth cervical nerve" }, "S44_C6": { - "class": "spinal_44" + "models": "ILX:0792748", + "name": "Posterior root of sixth cervical nerve" }, "S44_C7": { - "class": "spinal_44" + "models": "ILX:0789105", + "name": "Posterior root of seventh cervical nerve" }, "S44_C8": { - "class": "spinal_44" + "models": "ILX:0787870", + "name": "Posterior root of eighth cervical nerve" }, "S44_L1": { - "class": "spinal_44" - }, - "S44_L1-1": { "models": "ILX:0787779", "name": "posterior root of first lumbar nerve" }, "S44_L2": { - "class": "spinal_44" - }, - "S44_L2-1": { "models": "ILX:0792058", "name": "posterior root of second lumbar nerve" }, "S44_L3": { - "class": "spinal_44" - }, - "S44_L3-1": { "models": "ILX:0787227", "name": "posterior root of third lumbar nerve" }, "S44_L4": { - "class": "spinal_44" + "models": "ILX:0786747", + "name": "posterior root of fourth lumbar nerve" }, "S44_L5": { - "class": "spinal_44" + "models": "ILX:0785201", + "name": "posterior root of fifth lumbar nerve" }, "S44_L6": { - "class": "spinal_44" + "models": "ILX:0795491", + "name": "posterior root of sixth lumbar nerve" }, "S44_T1": { - "class": "spinal_44" + "models": "ILX:0785632", + "name": "posterior root of first thoracic nerve" }, "S44_T2": { - "class": "spinal_44" + "models": "ILX:0791802", + "name": "posterior root of second thoracic nerve" }, "S44_T3": { - "class": "spinal_44" + "models": "ILX:0789246", + "name": "posterior root of third thoracic nerve" }, "S44_T4": { - "class": "spinal_44" + "models": "ILX:0785816", + "name": "posterior root of fourth thoracic nerve" }, "S44_T5": { - "class": "spinal_44" + "models": "ILX:0788907", + "name": "posterior root of fifth thoracic nerve" }, "S44_T6": { - "class": "spinal_44" - }, - "S44_T6-1": { "models": "ILX:0785909", "name": "posterior root of sixth thoracic nerve" }, "S44_T7": { - "class": "spinal_44" - }, - "S44_T7-1": { "models": "ILX:0784605", "name": "posterior root of seventh thoracic nerve" }, "S44_T8": { - "class": "spinal_44" - }, - "S44_T8-1": { "models": "ILX:0792624", "name": "posterior root of eighth thoracic nerve" }, "S44_T9": { - "class": "spinal_44" - }, - "S44_T9-1": { "models": "ILX:0789741", "name": "posterior root of ninth thoracic nerve" }, "S44_T10": { - "class": "spinal_44" - }, - "S44_T10-1": { "models": "ILX:0789892", "name": "posterior root of tenth thoracic nerve" }, "S44_T11": { - "class": "spinal_44" - }, - "S44_T11-1": { "models": "ILX:0790338", "name": "posterior root of eleventh thoracic nerve" }, "S44_T12": { - "class": "spinal_44" - }, - "S44_T12-1": { "models": "ILX:0787665", "name": "posterior root of twelfth thoracic nerve" }, "S44_T13": { - "class": "spinal_44" - }, - "S44_T13_L": { - "models": "ILX:0795050", - "name": "Posterior root of left thirteenth thoracic nerve" - }, - "S44_T13_R": { - "models": "ILX:0795049", - "name": "Posterior root of right thirteenth thoracic nerve" + "models": "ILX:0795492", + "name": "posterior root of thirteenth thoracic nerve" }, "S44_S1": { - "class": "spinal_44" + "models": "ILX:0791633", + "name": "Posterior root of first sacral nerve" }, "S44_S2": { - "class": "spinal_44" + "models": "ILX:0788723", + "name": "Posterior root of second sacral nerve" }, "S44_S3": { - "class": "spinal_44" + "models": "ILX:0786145", + "name": "Posterior root of third sacral nerve" }, "S44_S4": { - "class": "spinal_44" + "models": "ILX:0785338", + "name": "Posterior root of fourth sacral nerve" }, "S45_C1": { "models": "UBERON:0002838", @@ -2007,6 +1990,72 @@ "type": "ganglion", "class": "auto-hide" }, + "ganglion_28-1": { + "models": "ILX:0795345", + "name": "myenteric nerve plexus ganglion of large intestine", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_29-1": { + "models": "UBERON:0001809", + "name": "enteric ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_30-1": { + "models": "ILX:0795348", + "name": "submucosal nerve plexus ganglion of small intestine", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_31-1": { + "models": "ILX:0793735", + "name": "Myenteric ganglion of small intestine", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_32-1": { + "models": "ILX:0795349", + "name": "submucosal nerve plexus ganglion of large intestine", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_33-1": { + "models": "ILX:0793734", + "name": "Myenteric ganglion", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_34-1": { + "models": "ILX:0795343", + "name": "myenteric nerve plexus ganglion of esophagus", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_35-1": { + "models": "ILX:0795350", + "name": "submucosal nerve plexus ganglion of rectum", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_36-1": { + "models": "ILX:0795351", + "name": "submucosal nerve plexus ganglion of anus", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_37-1": { + "models": "ILX:0795346", + "name": "myenteric nerve plexus ganglion of rectum", + "type": "ganglion", + "class": "auto-hide" + }, + "ganglion_38-1": { + "models": "ILX:0795347", + "name": "myenteric nerve plexus ganglion of anus", + "type": "ganglion", + "class": "auto-hide" + }, "body_1-1": { "class": "body_1" }, @@ -2163,6 +2212,18 @@ "brain_51-1": { "class": "brain_51" }, + "brain_54-1": { + "class": "brain_54" + }, + "brain_55-1": { + "class": "brain_55" + }, + "brain_56-1": { + "class": "brain_56" + }, + "brain_57-1": { + "class": "brain_57" + }, "brain_6-1": { "class": "brain_6" }, @@ -2184,6 +2245,9 @@ "cardio_13-1": { "class": "cardio_13" }, + "cardio_16-1": { + "class": "cardio_16" + }, "cardio_18-1": { "class": "cardio_18" }, @@ -2241,6 +2305,9 @@ "cardio_3-1": { "class": "cardio_3" }, + "cardio_30-1": { + "class": "cardio_30" + }, "cardio_31-1": { "class": "cardio_31" }, @@ -2253,9 +2320,6 @@ "cardio_35-1": { "class": "cardio_35" }, - "cardio_35-2": { - "class": "cardio_35" - }, "cardio_36-1": { "class": "cardio_36" }, @@ -2499,6 +2563,60 @@ "digestive_9-1": { "class": "digestive_9" }, + "digestive_90-1": { + "class": "digestive_90" + }, + "digestive_91-1": { + "class": "digestive_91" + }, + "digestive_92-1": { + "class": "digestive_92" + }, + "digestive_93-1": { + "class": "digestive_93" + }, + "digestive_94-1": { + "class": "digestive_94" + }, + "digestive_95-1": { + "class": "digestive_95" + }, + "digestive_96-1": { + "class": "digestive_96" + }, + "digestive_97-1": { + "class": "digestive_97" + }, + "digestive_98-1": { + "class": "digestive_98" + }, + "digestive_99-1": { + "class": "digestive_99" + }, + "digestive_100-1": { + "class": "digestive_100" + }, + "digestive_101-1": { + "class": "digestive_101" + }, + "digestive_102-1": { + "class": "digestive_102" + }, + "digestive_103-1": { + "class": "digestive_103" + }, + "digestive_104-1": { + "class": "digestive_104" + }, + "digestive_105-1": { + "class": "digestive_105" + }, + "digestive_106-1": { + "class": "digestive_106" + }, + "digestive_107-1": { + "class": "digestive_107" + }, "endocrine_2-1": { "class": "endocrine_2" }, @@ -3446,6 +3564,24 @@ "plexus_20-1": { "class": "plexus_20" }, + "plexus_21-1": { + "models": "UBERON:8410063", + "name": "myenteric nerve plexus of small intestine", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_24-1": { + "models": "ILX:0793704", + "name": "Esophageal nerve plexus", + "type": "ganglion", + "class": "auto-hide" + }, + "plexus_25-1": { + "models": "ILX:0797430", + "name": "nerve plexus along the left precaval vein", + "type": "ganglion", + "class": "auto-hide" + }, "label_5-1": { "class": "label_5" }, @@ -3515,6 +3651,30 @@ "label_27-1": { "class": "label_27" }, + "label_28-1": { + "class": "label_28" + }, + "label_29-1": { + "class": "label_29" + }, + "label_30-1": { + "class": "label_30" + }, + "label_31-1": { + "class": "label_31" + }, + "label_32-1": { + "class": "label_32" + }, + "label_33-1": { + "class": "label_33" + }, + "label_34-1": { + "class": "label_34" + }, + "label_35-1": { + "class": "label_35" + }, "CNVII_c": { "type": "nerve", "models": "UBERON:0001647" @@ -3888,6 +4048,22 @@ "type": "nerve", "models": "UBERON:0008810" }, + "trigeminal_c": { + "type": "nerve", + "models": "UBERON:0001645" + }, + "vagosymp_c": { + "type": "nerve", + "models": "ILX:0795507" + }, + "penile_cavernous_c": { + "type": "nerve", + "models": "ILX:0793807" + }, + "cardiac_interganglionic_c": { + "type": "nerve", + "models": "ILX:0796679" + }, "n_77_c": { "type": "nerve" }, diff --git a/proxy_features.json b/proxy_features.json index bd0ca10..6935695 100644 --- a/proxy_features.json +++ b/proxy_features.json @@ -12,5 +12,26 @@ "proxies": [ "UBERON:0002844" ] + }, + { + "feature": "UBERON:0004170", + "name": "Spinal cord ventral commissure", + "proxies": [ + "UBERON:0006469" + ] + }, + { + "feature": "UBERON:0002261", + "name": "dorsal root of spinal cord", + "proxies": [ + "ILX:0786747" + ] + }, + { + "feature": "UBERON:0002014", + "name": "inferior hypogastric nerve plexus", + "proxies": [ + "UBERON:0016508" + ] } ]