diff --git a/anatomical_map.json b/anatomical_map.json
index 197378e..e6e4a7d 100644
--- a/anatomical_map.json
+++ b/anatomical_map.json
@@ -176,8 +176,8 @@
"name": "cardiac muscle of left ventricle"
},
"cardio_24": {
- "term": "UBERON:0001986",
- "name": "endothelium"
+ "term": "UBERON:0015129",
+ "name": "Epicardial Fat"
},
"cardio_25": {
"term": "UBERON:0003381",
@@ -491,10 +491,6 @@
"term": "UBERON:0001238",
"name": "lamina propria of small intestine"
},
- "digestive_40": {
- "term": "UBERON:0001902",
- "name": "epithelium of small intestine"
- },
"digestive_41": {
"term": "UBERON:0018543",
"name": "lumen of intestine"
@@ -680,8 +676,80 @@
"name": "portal vein"
},
"digestive_89": {
- "term": "ILX:0741796",
- "name": "deep transverse perineal muscle"
+ "term": "ILX:0795342",
+ "name": "upper part of the anal canal"
+ },
+ "digestive_90": {
+ "term": "UBERON:0001902",
+ "name": "epithelium of small intestine"
+ },
+ "digestive_91": {
+ "term": "ILX:0771006",
+ "name": "wall of duodenum"
+ },
+ "digestive_92": {
+ "term": "UBERON:0014390",
+ "name": "muscle layer of ileum"
+ },
+ "digestive_93": {
+ "term": "UBERON:0012377",
+ "name": "muscle layer of jejunum"
+ },
+ "digestive_94": {
+ "term": "ILX:0773238",
+ "name": "Muscle layer of transverse colon"
+ },
+ "digestive_95": {
+ "term": "ILX:0795341",
+ "name": "muscle layer of proximal colon"
+ },
+ "digestive_96": {
+ "term": "UBERON:0005436",
+ "name": "common hepatic artery"
+ },
+ "digestive_97": {
+ "term": "UBERON:0011198",
+ "name": "muscle layer of large intestine"
+ },
+ "digestive_98": {
+ "term": "UBERON:0001278",
+ "name": "epithelium of large intestine"
+ },
+ "digestive_99": {
+ "term": "UBERON:0004222",
+ "name": "stomach smooth muscle"
+ },
+ "digestive_100": {
+ "term": "UBERON:8410061",
+ "name": "Longitudinal Muscle Layer of Colon"
+ },
+ "digestive_101": {
+ "term": "UBERON:0012419",
+ "name": "Taenia coli"
+ },
+ "digestive_102": {
+ "term": "UBERON:0003832",
+ "name": "esophagus muscle"
+ },
+ "digestive_103": {
+ "term": "UBERON:0004239",
+ "name": "small intestine smooth muscle"
+ },
+ "digestive_104": {
+ "term": "UBERON:0018111",
+ "name": "muscle layer of rectum"
+ },
+ "digestive_105": {
+ "term": "UBERON:0003354",
+ "name": "anal canal epithelium"
+ },
+ "digestive_106": {
+ "term": "UBERON:0012490",
+ "name": "muscle layer of anal canal"
+ },
+ "digestive_107": {
+ "term": "UBERON:0015716",
+ "name": "epithelium of rectum"
},
"reproductive_1": {
"term": "UBERON:0000995",
@@ -1200,7 +1268,7 @@
"name": "Barrington's nucleus"
},
"brain_14": {
- "term": "UBERON:0003040",
+ "term": "ILX:0793626",
"name": "Ventrolateral Periaqueductal Gray"
},
"brain_15": {
@@ -1339,6 +1407,26 @@
"term": "UBERON:0002141",
"name": "Oculomotor nucleus"
},
+ "brain_52-1": {
+ "term": "UBERON:0001717",
+ "name": "spinal nucleus of trigeminal nerve"
+ },
+ "brain_54": {
+ "term": "UBERON:0002945",
+ "name": "ventral posteromedial nucleus of thalamus"
+ },
+ "brain_55": {
+ "term": "UBERON:0002866",
+ "name": "caudal part of spinal trigeminal nucleus"
+ },
+ "brain_56": {
+ "term": "UBERON:0002873",
+ "name": "interpolar part of spinal trigeminal nucleus"
+ },
+ "brain_57": {
+ "term": "UBERON:0002591",
+ "name": "oral part of spinal trigeminal nucleus"
+ },
"bolser_2": {
"term": "ILX:0738309",
"name": "Internal branch of inferior laryngeal nerve"
@@ -1659,6 +1747,38 @@
"term": "ILX:0795060",
"name": "eccrine sweat gland of the face"
},
+ "label_28": {
+ "term": "UBERON:0001456",
+ "name": "face"
+ },
+ "label_29": {
+ "term": "UBERON:0000033",
+ "name": "head"
+ },
+ "label_30": {
+ "term": "UBERON:0000167",
+ "name": "oral cavity"
+ },
+ "label_31": {
+ "term": "UBERON:0002075",
+ "name": "viscus"
+ },
+ "label_32": {
+ "term": "UBERON:0001484",
+ "name": "articular capsule"
+ },
+ "label_33": {
+ "term": "UBERON:0002097",
+ "name": "skin of body"
+ },
+ "label_34": {
+ "term": "UBERON:0001015",
+ "name": "musculature"
+ },
+ "label_35": {
+ "term": "UBERON:0001630",
+ "name": "muscle organ"
+ },
"vagus_n": {
"term": "UBERON:0001759",
"name": "Vagus Nerve"
diff --git a/connectivity_terms.json b/connectivity_terms.json
index 40fcf7b..47148e9 100644
--- a/connectivity_terms.json
+++ b/connectivity_terms.json
@@ -1,21 +1,4 @@
[
- {
- "id": [
- "UBERON:0007240",
- [
- "UBERON:0000947"
- ]
- ],
- "name": "tunica adventitia of artery/aorta",
- "aliases": [
- [
- "UBERON:0007240",
- [
- "UBERON:0001496"
- ]
- ]
- ]
- },
{
"id": [
"ILX:0793234",
@@ -23,10 +6,6 @@
],
"name": "interganglionic branch of inferior cervical ganglion to middle cervical ganglion",
"aliases": [
- [
- "ILX:0793363",
- []
- ],
[
"ILX:0739241",
[]
@@ -126,10 +105,6 @@
[
"ILX:0795013",
[]
- ],
- [
- "ILX:0795017",
- []
]
]
},
@@ -231,19 +206,27 @@
]
],
[
- "ILX:0795012",
+ "UBERON:0018676",
[]
],
[
- "ILX:0795014",
+ "UBERON:0011926",
[]
],
[
- "UBERON:0018676",
+ "ILX:0795513",
[]
],
[
- "UBERON:0011926",
+ "ILX:0795514",
+ []
+ ],
+ [
+ "ILX:0795515",
+ []
+ ],
+ [
+ "ILX:0795516",
[]
]
]
@@ -491,18 +474,6 @@
]
]
},
- {
- "id": [
- "UBERON:0002108",
- []
- ],
- "aliases": [
- [
- "ILX:0793735",
- []
- ]
- ]
- },
{
"id": [
"UBERON:0000988",
@@ -1301,10 +1272,6 @@
[
"ILX:0786788",
[]
- ],
- [
- "ILX:0785947",
- []
]
]
},
@@ -1399,10 +1366,6 @@
[
"ILX:0786477",
[]
- ],
- [
- "ILX:0787285",
- []
]
]
},
@@ -1515,10 +1478,6 @@
[
"UBERON:0001279",
[]
- ],
- [
- "CL:1000488",
- []
]
]
},
@@ -1545,10 +1504,6 @@
"UBERON:0001172",
[]
],
- [
- "CL:0000182",
- []
- ],
[
"ILX:0795016",
[]
@@ -1592,7 +1547,7 @@
[]
],
[
- "CL:0009094",
+ "UBERON:0001639",
[]
]
]
@@ -1605,7 +1560,7 @@
"name": "T1 segment of thoracic spinal cord",
"aliases": [
[
- "ILX:0792474",
+ "ILX:0795493",
[]
]
]
@@ -1683,173 +1638,577 @@
[]
],
[
- "ILX:0795036",
+ "ILX:0795045",
[]
],
[
- "ILX:0795033",
+ "ILX:0795041",
[]
],
[
- "ILX:0795037",
+ "ILX:0795046",
[]
],
[
- "ILX:0795035",
+ "ILX:0795043",
[]
],
[
- "ILX:0795032",
+ "ILX:0795047",
[]
],
[
- "ILX:0795038",
+ "ILX:0795042",
[]
],
[
- "ILX:0795039",
+ "ILX:0795040",
[]
],
[
- "ILX:0795034",
+ "ILX:0795023",
[]
],
[
- "ILX:0795045",
+ "ILX:0795024",
[]
],
[
- "ILX:0795041",
+ "ILX:0795025",
[]
],
[
- "ILX:0795046",
+ "ILX:0795031",
[]
],
[
- "ILX:0795043",
+ "ILX:0795044",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793359",
+ []
+ ],
+ "name": "Thirteenth thoracic dorsal root ganglion",
+ "aliases": [
[
- "ILX:0795047",
+ "ILX:0795052",
[]
],
[
- "ILX:0795042",
+ "ILX:0795051",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001184",
+ []
+ ],
+ "name": "renal artery",
+ "aliases": [
[
- "ILX:0795048",
+ "ILX:0795058",
[]
],
[
- "ILX:0795040",
+ "ILX:0795053",
[]
- ],
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0787528",
+ []
+ ],
+ "name": "Second sacral nerve",
+ "aliases": [
[
- "ILX:0795023",
+ "ILX:0785238",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0791971",
+ []
+ ],
+ "name": "Third sacral nerve",
+ "aliases": [
+ [
+ "ILX:0788532",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0792327",
+ []
+ ],
+ "name": "Fourth sacral nerve",
+ "aliases": [
+ [
+ "ILX:0788777",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0001155",
+ []
+ ],
+ "name": "colon",
+ "aliases": [
+ [
+ "UBERON:0001156",
[]
],
[
- "ILX:0795024",
+ "UBERON:0001157",
[]
],
[
- "ILX:0795025",
+ "UBERON:0001158",
[]
],
[
- "ILX:0795031",
+ "UBERON:0001159",
[]
],
[
- "ILX:0795044",
+ "ILX:0773031",
[]
]
]
},
{
"id": [
- "ILX:0793359",
+ "ILX:0793558",
[]
],
- "name": "Thirteenth thoracic dorsal root ganglion",
+ "name": "Distal stomach",
"aliases": [
[
- "ILX:0795052",
+ "UBERON:0001165",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793658",
+ []
+ ],
+ "name": "Proximal stomach",
+ "aliases": [
+ [
+ "UBERON:0005477",
[]
],
[
- "ILX:0795051",
+ "UBERON:0001161",
[]
]
]
},
{
"id": [
- "ILX:0786163",
+ "ILX:0793656",
[]
],
- "name": "ventral root of the eighth cervical spinal cord segment",
+ "name": "myenteric nerve plexus of stomach",
"aliases": [
[
- "UBERON:0014634",
+ "ILX:0795344",
[]
]
]
},
{
"id": [
- "UBERON:0001184",
+ "ILX:0795492",
[]
],
- "name": "renal artery",
+ "name": "posterior root of thirteenth thoracic nerve",
"aliases": [
[
- "ILX:0795058",
+ "ILX:0795050",
[]
],
[
- "ILX:0795053",
+ "ILX:0795049",
[]
]
]
},
{
"id": [
- "ILX:0787528",
+ "UBERON:0018680",
[]
],
- "name": "Second sacral nerve",
+ "name": "greater splanchnic nerve",
"aliases": [
[
- "ILX:0785238",
+ "ILX:0796950",
[]
]
]
},
{
"id": [
- "ILX:0791971",
+ "UBERON:0018681",
[]
],
- "name": "Third sacral nerve",
+ "name": "lesser splanchnic nerve",
"aliases": [
[
- "ILX:0788532",
+ "ILX:0796952",
[]
]
]
},
{
"id": [
- "ILX:0792327",
+ "ILX:0785632",
[]
],
- "name": "Fourth sacral nerve",
+ "name": "Posterior root of first thoracic nerve",
"aliases": [
[
- "ILX:0788777",
+ "ILX:0790352",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0791802",
+ []
+ ],
+ "name": "Posterior root of second thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0784952",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0789246",
+ []
+ ],
+ "name": "Posterior root of third thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0788815",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0784605",
+ []
+ ],
+ "name": "Posterior root of seventh thoracic nerve",
+ "aliases": [
+ [
+ "ILX:0788023",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0787870",
+ []
+ ],
+ "name": "Posterior root of eight cervical nerve",
+ "aliases": [
+ [
+ "ILX:0792093",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006470"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eight cervical spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797431",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006457"
+ ]
+ ],
+ "name": "gray matter of spinal cord/first thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797432",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006458"
+ ]
+ ],
+ "name": "gray matter of spinal cord/second thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797433",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006459"
+ ]
+ ],
+ "name": "gray matter of spinal cord/third thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0797434",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006455"
+ ]
+ ],
+ "name": "gray matter of spinal cord/seventh thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0796498",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006456"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eight thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795032",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006465"
+ ]
+ ],
+ "name": "gray matter of spinal cord/ninth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795033",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006466"
+ ]
+ ],
+ "name": "gray matter of spinal cord/tenth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795034",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006467"
+ ]
+ ],
+ "name": "gray matter of spinal cord/eleventh thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795035",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006468"
+ ]
+ ],
+ "name": "gray matter of spinal cord/twelfth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795036",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "ILX:0793357"
+ ]
+ ],
+ "name": "gray matter of spinal cord/thirteenth thoracic spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795037",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006448"
+ ]
+ ],
+ "name": "gray matter of spinal cord/first lumbar spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795038",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002315",
+ [
+ "UBERON:0006450"
+ ]
+ ],
+ "name": "gray matter of spinal cord/second lumbar spinal cord segment",
+ "aliases": [
+ [
+ "ILX:0795039",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002844",
+ []
+ ],
+ "name": "eight cervical dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785251",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002845",
+ []
+ ],
+ "name": "first thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0784660",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002846",
+ []
+ ],
+ "name": "second thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785420",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002847",
+ []
+ ],
+ "name": "third thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0791100",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "UBERON:0002850",
+ []
+ ],
+ "name": "seventh thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0785878",
+ []
+ ]
+ ]
+ },
+ {
+ "id": [
+ "ILX:0793359",
+ []
+ ],
+ "name": "thirteenth thoracic dorsal root ganglion",
+ "aliases": [
+ [
+ "ILX:0795494",
[]
]
]
diff --git a/manifest.json b/manifest.json
index 7944682..cf6adb4 100644
--- a/manifest.json
+++ b/manifest.json
@@ -3,7 +3,7 @@
"models": "NCBITaxon:10090",
"description": "description.json",
"properties": "properties.json",
- "sckan-version": "sckan-2024-09-21",
+ "sckan-version": "sckan-2026-02-11",
"sources": [
{
"id": "whole-mouse",
diff --git a/mouse_flatmap.svg b/mouse_flatmap.svg
index ff9fc7d..bbaee42 100644
--- a/mouse_flatmap.svg
+++ b/mouse_flatmap.svg
@@ -690,75 +690,39 @@