clean up test configs a little

Author: ochkalova

conf/test.config

@@ -25,10 +25,10 @@ params {
     // Input data
     // TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
     // TODO nf-core: Give any required params for the test so that command line flags are not needed
-    input_assembly  = 'assets/samplesheet_assembly.csv'
+    input  = 'assets/samplesheet_assembly.csv'
 
-    //mode                       = "mags"
-    //ena_genome_study_accession = "PRJEB98843"
-    //centre_name                = "TEST_CENTER"
+    mode                       = "metagenomic_assemblies"
+    ena_genome_study_accession = "PRJEB98843"
+    centre_name                = "TEST_CENTER"
 
 }

conf/test_assembly.config

@@ -25,7 +25,7 @@ params {
     // Input data
     // TODO nf-core: Specify the paths to your test data on nf-core/test-datasets
     // TODO nf-core: Give any required params for the test so that command line flags are not needed
-    input_genome  = params.pipelines_testdata_base_path + 'seqsubmit/samplesheets/samplesheet_genomesubmit.csv'
+    input  = params.pipelines_testdata_base_path + 'seqsubmit/samplesheets/samplesheet_genomesubmit.csv'
 
     mode                       = "mags"
     ena_genome_study_accession = "PRJEB98843"

conf/test_genome.config

@@ -15,7 +15,7 @@ config {
     profile "test"
 
     // list of filenames or patterns that should be trigger a full test run
-    triggers 'nextflow.config', 'nf-test.config', 'conf/test.config', 'tests/nextflow.config', 'tests/.nftignore'
+    triggers 'nextflow.config', 'nf-test.config', 'conf/test_genome.config', 'conf/test_assembly.config', 'tests/nextflow.config', 'tests/.nftignore'
 
     // load the necessary plugins
     plugins {