Issues

• Whole genome or at least whole chromosome visualisation

  vgteam/sequenceTubeMap#496 · Filter by author Bio-finder opened on Apr 23, 2026

• Sequence Tube Map shows spiral/loop-like alignments on a circular, highly connected vg graph, but BLAST/linear inspection looks colinear

  vgteam/sequenceTubeMap#495 · Filter by author florenmartino opened on Feb 11, 2026

• GAM file is too big to visualize

  vgteam/sequenceTubeMap#494 · Filter by author lizakulaeva opened on Jan 19, 2026

• Unexpected token 'I', "Internal S"... is not valid JSON

  vgteam/sequenceTubeMap#493 · Filter by author guo23e opened on Sep 8, 2025
  1

• vg chunk failed: error[vg chunk]: input path not found in xg index

  vgteam/sequenceTubeMap#492 · Filter by author SimonaSecomandi opened on Aug 20, 2025
  8

• GLIBC version incompatibility

  vgteam/sequenceTubeMap#491 · Filter by author guo23e opened on Aug 18, 2025
  5

• BED files should be interpreted as 0-based end-exclusive

  vgteam/sequenceTubeMap#488 · Filter by author WallBPG opened on Aug 14, 2025
  4

• Add legend for insertions/edits/deletions

  vgteam/sequenceTubeMap#483 · Filter by author adamnovak opened on Jun 12, 2025

• Synthetic Data Examples

  vgteam/sequenceTubeMap#478 · Filter by author mcbbaker opened on Apr 9, 2025
  1

• Hosting SequenceTubeMap for Public Access

  vgteam/sequenceTubeMap#477 · Filter by author syresbr opened on Apr 1, 2025
  1

• Contain/restrict memory usage for vg commands, per-job and in total

  vgteam/sequenceTubeMap#474 · Filter by author adamnovak opened on Feb 11, 2025
  1

• Created a fork for a structural variant view and other additions

  vgteam/sequenceTubeMap#465 · Filter by author JasperGeelen opened on Jan 1, 2025
  1

• Legend state / samples checked not stored when modifying configuration

  buggood-first-issuehelp wanted
  vgteam/sequenceTubeMap#464 · Filter by author maxm4 opened on Dec 3, 2024
  1

• How can I customize colors for distinct groups based on my specific preferences?

  enhancementgood-first-issuehelp wanted
  vgteam/sequenceTubeMap#463 · Filter by author GooLey1025 opened on Nov 21, 2024
  1

• Re-take help screenshots

  vgteam/sequenceTubeMap#461 · Filter by author adamnovak opened on Oct 16, 2024

• Automatic node flipping not working on HPRC subgraphs

  vgteam/sequenceTubeMap#457 · Filter by author adamnovak opened on Sep 4, 2024

• Make ITCR September 16 slide on how to install Tube Map and use with Lancet

  vgteam/sequenceTubeMap#455 · Filter by author adamnovak opened on Aug 14, 2024
  1

  

• Bundle tube map for easy installation into an executable or tarball

  vgteam/sequenceTubeMap#453 · Filter by author adamnovak opened on Aug 14, 2024
  4

  

• How to interpret variation graphs in SequenceTubeMap

  vgteam/sequenceTubeMap#450 · Filter by author gforg34 opened on Jun 18, 2024

• Off by 1 error on end position bounds check

  vgteam/sequenceTubeMap#449 · Filter by author adamnovak opened on Jun 14, 2024
  1

• Graph can be entirely out of the image bounds in a downloaded image

  vgteam/sequenceTubeMap#448 · Filter by author adamnovak opened on Jun 14, 2024

• Visualizing a graph from short sequences

  vgteam/sequenceTubeMap#446 · Filter by author pbreeder opened on Jun 1, 2024
  2

• Reads aren't clickable within nodes

  vgteam/sequenceTubeMap#430 · Filter by author adamnovak opened on May 7, 2024
  2

• Better handling of the case where vg is not installed

  vgteam/sequenceTubeMap#424 · Filter by author adamnovak opened on Apr 16, 2024

• Reads can become oddly wide

  vgteam/sequenceTubeMap#419 · Filter by author adamnovak opened on Apr 9, 2024