Issues

• installation issue

  AstraZeneca-NGS/VarDictJava#401 · Filter by author Anjaligarg006 opened on Jan 30, 2025
  1

• How is ADJAF Calculated? ADJAF >1

  AstraZeneca-NGS/VarDictJava#400 · Filter by author abridgeland opened on Dec 13, 2024

• vcf-merge error

  AstraZeneca-NGS/VarDictJava#398 · Filter by author wang0430 opened on Jul 29, 2024

• some variant can't output in two reapeat sample

  AstraZeneca-NGS/VarDictJava#397 · Filter by author litun-fkby opened on Jan 19, 2024

• Current and future support for Vardict

  AstraZeneca-NGS/VarDictJava#396 · Filter by author alexander-e-f-smith opened on Dec 8, 2023
  2

• the option -3 result

  AstraZeneca-NGS/VarDictJava#395 · Filter by author litun-fkby opened on Oct 24, 2023

• question about ODDRATIO

  AstraZeneca-NGS/VarDictJava#394 · Filter by author litun-fkby opened on Oct 16, 2023

• Running error

  AstraZeneca-NGS/VarDictJava#393 · Filter by author pagnasok opened on Sep 25, 2023

• Can I get the read names of a variant?

  AstraZeneca-NGS/VarDictJava#391 · Filter by author Crispy13 opened on Jul 3, 2023

• Non-reproducible variants called with same command for vardict

  AstraZeneca-NGS/VarDictJava#390 · Filter by author KshamaGoyal opened on Jun 7, 2023

• Missing variant / how to interpret vardict log file

  AstraZeneca-NGS/VarDictJava#389 · Filter by author Redmar-van-den-Berg opened on May 22, 2023

• VarDict calls many insertions in homopolymer regions

  AstraZeneca-NGS/VarDictJava#388 · Filter by author Redmar-van-den-Berg opened on May 19, 2023

• The AF value VarDict calculate cannot match with IGV result.

  AstraZeneca-NGS/VarDictJava#387 · Filter by author GA-1101 opened on May 9, 2023

• AF > 1 with DP < VD for some Long deletions

  AstraZeneca-NGS/VarDictJava#386 · Filter by author alexander-e-f-smith opened on Apr 18, 2023
  2

• Having trouble downloading Vardict 1.8.3 through wget

  AstraZeneca-NGS/VarDictJava#385 · Filter by author ZichanLi opened on Apr 4, 2023
  2

• JAVA ERROR RUNNING VARDICTJAVA

  AstraZeneca-NGS/VarDictJava#384 · Filter by author espelpz opened on Apr 3, 2023
  3

• vardict can not call the mutation correctly

  AstraZeneca-NGS/VarDictJava#383 · Filter by author wyy1234-github opened on Mar 23, 2023

• VCF merging between Mutect2 and VarDict output fail

  AstraZeneca-NGS/VarDictJava#382 · Filter by author lmanchon opened on Mar 9, 2023
  2

• Signal/Noise (highQualityToLowQualityRatio) calculation misleading when no low/bad qual reads are present

  AstraZeneca-NGS/VarDictJava#381 · Filter by author rollf opened on Feb 28, 2023

• cram input

  AstraZeneca-NGS/VarDictJava#380 · Filter by author GSBaohuaGu opened on Feb 24, 2023
  1

• Possible formatting issue in the somatic mode

  AstraZeneca-NGS/VarDictJava#378 · Filter by author amunzur opened on Feb 23, 2023

• ADJAF - Adjusted AF for indels due to local realignment

  AstraZeneca-NGS/VarDictJava#377 · Filter by author lt11 opened on Feb 15, 2023
  1

• Vardict cannot correctly count the reads in the normal sample

  AstraZeneca-NGS/VarDictJava#376 · Filter by author shenzhongjun opened on Jan 11, 2023

• ArrayIndexOutOfBoundsException

  AstraZeneca-NGS/VarDictJava#375 · Filter by author ds21uab opened on Jan 6, 2023

• UMI-based variant calling

  AstraZeneca-NGS/VarDictJava#374 · Filter by author andreakv93 opened on Dec 19, 2022