Skip to content

Add alignment position info and read length to RAD format#9

Open
ygao61 wants to merge 23 commits intodevfrom
dev-pos
Open

Add alignment position info and read length to RAD format#9
ygao61 wants to merge 23 commits intodevfrom
dev-pos

Conversation

@ygao61
Copy link
Collaborator

@ygao61 ygao61 commented Dec 10, 2025

This PR introduces alignment-level position fields & file-level read length to the RAD format

@rob-p rob-p changed the base branch from main to dev December 11, 2025 02:15
rob-p and others added 22 commits December 11, 2025 00:21
Co-authored-by: rob-p <361470+rob-p@users.noreply.github.com>
Co-authored-by: rob-p <361470+rob-p@users.noreply.github.com>
…ap in mapping hot path

Co-authored-by: rob-p <361470+rob-p@users.noreply.github.com>
…lementation

Co-authored-by: rob-p <361470+rob-p@users.noreply.github.com>
Co-authored-by: rob-p <361470+rob-p@users.noreply.github.com>
…ation

Replace phmap::flat_hash_map with ankerl::unordered_dense in mapping hot path
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

3 participants