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Organoid-enabling plugins#311

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ErinWeisbart merged 3 commits into
gaussian_byslicefrom
rescale_byslice
Jul 16, 2026
Merged

Organoid-enabling plugins#311
ErinWeisbart merged 3 commits into
gaussian_byslicefrom
rescale_byslice

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@bethac07

@bethac07 bethac07 commented Jul 9, 2026

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Adds a RescaleIntensitySlicewise plugin (allows for percentile-based rescaling, finally! CellProfiler/CellProfiler#4891 ), as well as a plugin that just removes the top and bottom z planes from binary masks because they're just too cumbersome to get clean (and we probably don't want those cells anyway)

@bethac07 bethac07 changed the title RescaleIntensitySlicewise plugin Organoid-enabling plugins Jul 15, 2026
@bethac07 bethac07 requested a review from ErinWeisbart July 15, 2026 21:30
Removed commented-out help text in create_settings method.
@ErinWeisbart ErinWeisbart merged commit fbceaee into gaussian_byslice Jul 16, 2026
@ErinWeisbart ErinWeisbart deleted the rescale_byslice branch July 16, 2026 16:33
ErinWeisbart added a commit that referenced this pull request Jul 16, 2026
* add by-slice to gaussian

* Organoid-enabling plugins (#311)

* RescaleIntensitySlicewise plugin

* MaskTopAndBottomZ plugin

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Co-authored-by: Beth Cimini <bethac07@users.noreply.github.com>
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2 participants