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Surface recon determinism#818

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ClePol wants to merge 2 commits into
Deep-MI:devfrom
ClePol:surface-determinism-pr
Draft

Surface recon determinism#818
ClePol wants to merge 2 commits into
Deep-MI:devfrom
ClePol:surface-determinism-pr

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@ClePol ClePol commented May 21, 2026

Summary

This PR contains

  1. An improvement of the surface pipeline to make surface reconstruction deterministic by setting fixed seeds / deterministic options across the relevant surface-generation steps.
  2. A fix for a false failure in the surfaceRAS header sanity check after mri_mc: the old tr | grep -q pipeline could report failure due to SIGPIPE even when mris_info showed valid vertex locs : surfaceRAS.

Testing

End-to-end pipeline run before and after changes on 5 cases.

@m-reuter m-reuter marked this pull request as draft May 26, 2026 10:51
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