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new release v2.5.3#831

Merged
m-reuter merged 22 commits into
stablefrom
dev
May 29, 2026
Merged

new release v2.5.3#831
m-reuter merged 22 commits into
stablefrom
dev

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@m-reuter
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merging recent changes for point release, mainly:

  • allow docker run without passing USER
  • fix some errors in visualisation of counter in CC module
  • minor changes (speedup, remove randomness in lapy call, etc).

m-reuter and others added 22 commits May 22, 2026 17:50
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 5 to 6.
- [Release notes](https://github.com/actions/setup-python/releases)
- [Commits](actions/setup-python@v5...v6)

---
updated-dependencies:
- dependency-name: actions/setup-python
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 4 to 7.
- [Release notes](https://github.com/actions/upload-artifact/releases)
- [Commits](actions/upload-artifact@v4...v7)

---
updated-dependencies:
- dependency-name: actions/upload-artifact
  dependency-version: '7'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [astral-sh/setup-uv](https://github.com/astral-sh/setup-uv) from 5 to 7.
- [Release notes](https://github.com/astral-sh/setup-uv/releases)
- [Commits](astral-sh/setup-uv@v5...v7)

---
updated-dependencies:
- dependency-name: astral-sh/setup-uv
  dependency-version: '7'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/checkout](https://github.com/actions/checkout) from 4 to 6.
- [Release notes](https://github.com/actions/checkout/releases)
- [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md)
- [Commits](actions/checkout@v4...v6)

---
updated-dependencies:
- dependency-name: actions/checkout
  dependency-version: '6'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 4 to 8.
- [Release notes](https://github.com/actions/download-artifact/releases)
- [Commits](actions/download-artifact@v4...v8)

---
updated-dependencies:
- dependency-name: actions/download-artifact
  dependency-version: '8'
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
…s/setup-python-6

Bump actions/setup-python from 5 to 6
…s/upload-artifact-7

Bump actions/upload-artifact from 4 to 7
…-sh/setup-uv-7

Bump astral-sh/setup-uv from 5 to 7
…s/checkout-6

Bump actions/checkout from 4 to 6
…s/download-artifact-8

Bump actions/download-artifact from 4 to 8
Replace per-row scipy.stats.mode calls in sample_parc smoothing with np.bincount().argmax(), preserving scipy's smallest-label tie behavior for non-negative labels.

Validation on 114823_MR1 against surf_speed_no_fs_t1_threads8_run1: mapped annotations byte-identical; final MRI volumes have zero voxel changes; white/pial/sphere.reg surfaces and morphometry have zero changes. sample_parc.py dropped from 61.57s total to 8.59s total; full wall time changed from 40:22.01 to 39:58.11.
Merging some commits for determinism and speed-up into surf stream
@m-reuter m-reuter merged commit 926af8d into stable May 29, 2026
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2 participants