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Add db components from ispyb for processing outputs#706

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stephen-riggs merged 43 commits intomainfrom
processing-db
Feb 26, 2026
Merged

Add db components from ispyb for processing outputs#706
stephen-riggs merged 43 commits intomainfrom
processing-db

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@stephen-riggs stephen-riggs commented Dec 1, 2025

Adds some parts from ispyb into the murfey database. Requires extending some tables such as DataCollectionGroup and adding all the EM-specific tables from ispyb (e.g. CTF)

To consider:

  • How to set up murfey with/without processing DB
  • Ways to insert processing results
  • GridSquare, FoilHole, Movie tables are duplicate names
  • Do we want cascade delete on tables?

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codecov bot commented Jan 7, 2026

Codecov Report

❌ Patch coverage is 98.12207% with 4 lines in your changes missing coverage. Please review.
✅ Project coverage is 47.93%. Comparing base (70d5cdb) to head (7ea39a7).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #706      +/-   ##
==========================================
+ Coverage   46.85%   47.93%   +1.08%     
==========================================
  Files          91       91              
  Lines        9692     9902     +210     
  Branches     1278     1278              
==========================================
+ Hits         4541     4747     +206     
- Misses       4929     4933       +4     
  Partials      222      222              
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@stephen-riggs stephen-riggs marked this pull request as ready for review February 20, 2026 15:56
@stephen-riggs stephen-riggs merged commit 5f3244a into main Feb 26, 2026
17 checks passed
@stephen-riggs stephen-riggs deleted the processing-db branch February 26, 2026 16:20
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2 participants