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Add soft x-ray tomography#759

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stephen-riggs merged 14 commits intomainfrom
sxt-context
Mar 16, 2026
Merged

Add soft x-ray tomography#759
stephen-riggs merged 14 commits intomainfrom
sxt-context

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@stephen-riggs stephen-riggs commented Mar 12, 2026

Adds a context file for SXT data collection, triggered if txrm or xrm files are seen. This will register data collection groups, data collections, processing jobs and autoprocprograms for txrm files.

When a txrm file is seen the metadata is read from the header and processing is launched with a newly defined recipe "sxt-tomo-align"

Requires a new experiment type in ispyb to be made

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codecov bot commented Mar 13, 2026

Codecov Report

❌ Patch coverage is 76.15894% with 36 lines in your changes missing coverage. Please review.
✅ Project coverage is 48.85%. Comparing base (5781360) to head (af51f74).
⚠️ Report is 1 commits behind head on main.

Additional details and impacted files
@@            Coverage Diff             @@
##             main     #759      +/-   ##
==========================================
+ Coverage   48.41%   48.85%   +0.43%     
==========================================
  Files          91       93       +2     
  Lines       10062    10185     +123     
  Branches     1310     1326      +16     
==========================================
+ Hits         4872     4976     +104     
- Misses       4954     4959       +5     
- Partials      236      250      +14     
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@stephen-riggs stephen-riggs marked this pull request as ready for review March 13, 2026 15:59
@stephen-riggs stephen-riggs merged commit c221083 into main Mar 16, 2026
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@stephen-riggs stephen-riggs deleted the sxt-context branch March 16, 2026 15:15
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2 participants