This repository contains tools for classifying tumors according to the MSK OncoTree (OT) platform: https://oncotree.mskcc.org

OncoTreeClassifier - Makes use of a Ollama deployed LLM to match tumor information to the best OT Tissue and then the best OT Node within that Tissue.

OncoTreeComparator - Benchmarks the classifier codes against a truth set of 100 Tempus tumor reports.

OncoTreePrinter - Parses the OT data structure, pulls the referenced NCI Thesaurus codes, filters, formats, and outputs text for LLM prompt construction

TempusPathoPrinter - (USeq Repo) Parses Tempus v3.3+ json reports for information useful for the OncoTreeClassifier.

Resources - Reference files for the various applications. See the oncoTree10MinPres2April2026.pptx for a project overview.