Add dtype kwarg to check_box to preserve input precision - #5471
Open
Phantom8420 wants to merge 2 commits into
Open
Phantom8420 wants to merge 2 commits into
Phantom8420 wants to merge 2 commits into
Conversation
check_box always cast to float32 internally, which forced any triclinic box to also come out as float32 since it just called triclinic_vectors on the already-cast array. triclinic_vectors already accepted a dtype kwarg, so this just plumbs the same option through check_box, keeping float32 as the default so no existing caller changes behavior. Fixes MDAnalysis#3500
Documentation build overview
|
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## develop #5471 +/- ##
===========================================
- Coverage 93.87% 93.86% -0.02%
===========================================
Files 182 182
Lines 22522 22522
Branches 3206 3206
===========================================
- Hits 21143 21140 -3
- Misses 917 919 +2
- Partials 462 463 +1 ☔ View full report in Codecov by Harness. 🚀 New features to boost your workflow:
|
BradyAJohnston
requested changes
Sep 16, 2026
BradyAJohnston
left a comment
Member
There was a problem hiding this comment.
We can't review until you have filled out the PR template.
This branch has not been deployed
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Fixes #3500
Changes made in this Pull Request:
check_box()accepts a newdtypekeyword (defaultnumpy.float32, so existing behavior/callers are unchanged) and passes it through totriclinic_vectors(), which already supported it.LLM / AI generated code disclosure
LLMs or other AI-powered tools (beyond simple IDE use cases) were used in this contribution: yes
PR Checklist
package/CHANGELOGfile updated?package/AUTHORS? (If it is not, add it!)Developers Certificate of Origin
I certify that I can submit this code contribution as described in the Developer Certificate of Origin, under the MDAnalysis LICENSE.