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Sample cell number issue

Status: Open.

#382 In MarioniLab/miloR;

· feather-W opened on Apr 26, 2026

Best practice for Milo with mixed-effects models and multiple comparisons

Status: Open.

#381 In MarioniLab/miloR;

· nmdrf opened on Mar 4, 2026

DA results change when varying d by one dimension on the same integrated object

Status: Open.

#379 In MarioniLab/miloR;

· lcoletto opened on Feb 16, 2026

Guidelines for large sample sizes

Status: Open.

#378 In MarioniLab/miloR;

· igordot opened on Jan 5, 2026

BayesianOptimization for parameter selection

Status: Open.

#374 In MarioniLab/miloR;

· SeZuNo opened on Sep 16, 2025

Neighborhood Graph Construction shared or not

Status: Open.

#370 In MarioniLab/miloR;

· RunyuXia opened on Aug 5, 2025

there were an error in testNhoods()

Status: Open.

#364 In MarioniLab/miloR;

· herong2006 opened on Apr 3, 2025

label hoods in NhoodGraphDA

Status: Open.

#363 In MarioniLab/miloR;

· Luuk024026 opened on Mar 28, 2025

Predefined Graph Import Still Not Available to Use

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#318 In MarioniLab/miloR;

· DarioS opened on Apr 10, 2024

How to implement more complex contrast formulas

Status: Open.

#305 In MarioniLab/miloR;

· CarlottaHS opened on Feb 2, 2024

merging Nhood with logFC of opposite sign

bugSomething isn't workingSomething isn't working

Status: Open.

#270 In MarioniLab/miloR;

· gianfilippo opened on Mar 3, 2023

Overlay DA neighborhoods on embedding

Status: Open.

#251 In MarioniLab/miloR;

· mdmanurung opened on Nov 16, 2022