fix(geneformer): add nvidia-resiliency-ext>=0.6.0 dependency

[svc-bionemo]

Problem

The nightly CI run for models/geneformer fails with:

AssertionError: Minimum required nvidia-resiliency-ext package version is 0.6.0.

All 4 failing tests (test_geneformer_checkpoint_loss, test_geneformer_checkpoint_weight_compatibility, test_te_bert_layer_and_hf_bert_layer_similar_output_values_random_inputs, test_geneformer_model_loss_validity) hit this at import time through the chain:
geneformer.convert → nemo.lightning → megatron.core → dist_checkpointing.strategies.nvrx.has_nvrx_async_support()

Root Cause

megatron-core now requires nvidia-resiliency-ext >= 0.6.0 at import time, but the base container image (nvcr.io/nvidia/pytorch:26.04-py3) ships an older version. Since the geneformer pyproject.toml did not pin this transitive dependency, pip install during Docker build did not upgrade it.

Fix

Add nvidia-resiliency-ext>=0.6.0 as an explicit dependency in bionemo-recipes/models/geneformer/pyproject.toml.

CI Run

https://github.com/NVIDIA-BioNeMo/bionemo-framework/actions/runs/26945822391

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[svc-bionemo]

Closing in favor of #1598, which resolves the same issue.

Why this approach failed: Adding nvidia-resiliency-ext>=0.6.0 as a direct dependency creates an unsolvable pip resolution conflict — nvidia-resiliency-ext 0.6.0 requires grpcio-tools>=1.76.0 which requires protobuf>=6.31.1, but nemo-toolkit==2.4.0 pins protobuf~=5.29.5.

Fix in #1598: Uses a .ci_build.sh script to install nvidia-resiliency-ext>=0.6.0 with --no-deps, avoiding the transitive grpcio-tools/protobuf conflict while satisfying the megatron-core runtime assertion.