Simbio Tutorial for COMBINE 2026. To run in a browser following these links to run it on marimo.app:
- https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/poincare_intro.py
- https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/simbio_intro.py
- https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/volume_showcase.py
- https://marimo.app/https://github.com/dyscolab/simbio-tutorial/blob/main/tutorials/analysis.py
For running it locally it is recommended to use pixi to manage environments. Run
pixi run open
to open landing page with all tutorial notebooks in browser or
pixi run open [path to notebook]
to open a specific tutorial.