mutual information and related methods#89
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bogovicj wants to merge 2 commits intoimglib:masterfrom
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This pull request has been mentioned on Image.sc Forum. There might be relevant details there: https://forum.image.sc/t/migrating-mutualinformation-into-imglib2-algorithm/44798/3 |
imagejan
reviewed
Nov 4, 2020
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| for( int i = 0; i < ni; i++ ) | ||
| { | ||
| count = subHistCount( hist, dim, i ); | ||
| ctot += count; | ||
| double p = 1.0 * count / total; | ||
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| if( p > 0 ) | ||
| entropy -= p * Math.log( p ); | ||
| } |
hanslovsky
reviewed
Apr 15, 2021
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| final IterableInterval< T > dataA, | ||
| final IterableInterval< T > dataB, |
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Is there a need to pass IterableInterval? Could it just be Iterable?
hanslovsky
reviewed
Apr 15, 2021
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| * @param rai the RandomAccessibleInterval | ||
| * @param ra the RandomAccessible |
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Inconsistent with actual types of parameters in method signature
hanslovsky
reviewed
Apr 15, 2021
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| ArrayList< BinMapper1d< T > > binMappers = new ArrayList< BinMapper1d< T > >( 2 ); | ||
| binMappers.add( binMapper ); | ||
| binMappers.add( binMapper ); |
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Not tested but something like this should be possible:
Suggested change
| ArrayList< BinMapper1d< T > > binMappers = new ArrayList< BinMapper1d< T > >( 2 ); | |
| binMappers.add( binMapper ); | |
| binMappers.add( binMapper ); | |
| List< BinMapper1d< T > > binMappers = Arrays.asList( binMapper, binMapper ); |
hanslovsky
reviewed
Apr 15, 2021
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| List< Iterable< T > > data = new ArrayList< Iterable< T > >( 2 ); | ||
| data.add( dataA ); | ||
| data.add( dataB ); |
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Not tested but something like this should be possible:
Suggested change
| List< Iterable< T > > data = new ArrayList< Iterable< T > >( 2 ); | |
| data.add( dataA ); | |
| data.add( dataB ); | |
| List< Iterable< T > > data = Arrays.asList( dataA, dataB ); |
hanslovsky
reviewed
Apr 15, 2021
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| double HA = marginalEntropy( jointHist, 0 ); | ||
| double HB = marginalEntropy( jointHist, 1 ); | ||
| double HAB = entropy( jointHist ); | ||
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| return HA + HB - HAB; |
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This should call mutualInformation( jointHist ) instead of duplicating the code.
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