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  1. RNAseq_dicty RNAseq_dicty Public

    RNA sequencing analysis of Dictyostelium discoideum mutants, with differential expression, time series analysis, gene set comparison, and network analysis.

    Jupyter Notebook 1

  2. crossspecies-benchmark crossspecies-benchmark Public

    Reproducible cross-species benchmark of Geneformer, scGPT and UCE single-cell embeddings against PCA and scVI in developmental D. discoideum and C. elegans atlases.

    Python

  3. scRNA_dicty scRNA_dicty Public

    Single cell RNA sequencing analysis pipeline for Dictyostelium discoideum, covering quality control, dimensionality reduction, clustering, cell type annotation, and developmental synchronicity anal…

    Jupyter Notebook

  4. biolab/dictyexpress-js biolab/dictyexpress-js Public

    TypeScript frontend for DictyExpress, a web platform for interactive gene expression analysis and biological data exploration in Dictyostelium discoideum.

    TypeScript