Make release 1.0.0

[delfiterradas]

Closes #80:

Added

• [#87] - Add local test profile (@delfiterradas, review by @atrigila).
• [#79] - Add exit status for RCLONE modules in multiqc report (@delfiterradas, review by @atrigila).
• [#74] - Implement warning and --download parameter when working with remote directories and SHA checksums (@delfiterradas, review by @atrigila, @apeltzer and @antoniasaracco).
• [#67] - Copy only files which are successfully validated (@delfiterradas, review by @atrigila and @antoniasaracco).
• [#57] - Add nf-tests with edge cases(@atrigila, review by @delfiterradas).
• [#55] - Add subdirectories with sample id to results. Improvements to MultiQC report (width of columns, sections and sub-section headers)colors to multiqc results and display first errors in tables (@atrigila, review by @delfiterradas).
• [#54] - Add colors to multiqc results and display first errors in tables (@atrigila, review by @delfiterradas).
• [#31] - Compute checksum for each input file (@delfiterradas, review by @atrigila).
• [#35] - Compare generated checksum to given checksum in input and update test profiles (@delfiterradas, review by @atrigila).
• [#46] - Import Rclone module from nf-core(@antoniasaracco, review by @delfiterradas).
• [#41] - Generate MultiQC Report with comparechecksum tables and input samplesheet (@delfiterradas, review by @atrigila).
• [#49] - Install RCLONE_CHECK and RCLONE_CHECKSUM modules from nf-core (@delfiterradas, review by @atrigila and @antoniasaracco).
• [#59] - Create pipeline documentation (@antoniasaracco, review by @atrigila and @delfiterradas).

Fixed

• [#84] - Update RCLONE_ modules, enhance source and destination path handling, add local create_filter_list module and other small fixes (@delfiterradas, review by @atrigila).
• [#83] - Add apptainer version to avoid error in CI test (@delfiterradas, review by @atrigila).
• [#78] - Fixed linting issues reported by nf-core and Nextflow, and updated rclone modules and nf-tests to sort generated report files for deterministic snapshots (@atrigila, review by @delfiterradas and @antoniasaracco).
• [#76] - Remove --one-way from rclone/checksum confi (@delfiterradas, review by @atrigila and @antoniasaracco).
• [#73] - Create tmp files_to_copy.tx avoiding error with write permissions in work directory (@delfiterradas, review by @atrigila and @antoniasaracco).

[delfiterradas]

Hi @mazzalab and @ewels,
Thanks so much for taking the time to review the PR and for all the helpful suggestions! I’ve gone through all the comments and implemented the requested changes. Whenever you have a chance, it would be great if you could have another look at the updated version and let me know what you think :)