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Important! Template update for nf-core/tools v4.1.0 - #282

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maxulysse merged 8 commits into
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nf-core-template-merge-4.1.0
Sep 16, 2026
Merged

maxulysse merged 8 commits into
devfrom
nf-core-template-merge-4.1.0

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Version 4.1.0 of nf-core/tools has just been released with updates to the nf-core template. For more details, check out the blog post: https://nf-co.re/blog/2026/tools-4_1_0

Please make sure to merge this pull-request as soon as possible, resolving any merge conflicts in the nf-core-template-merge-4.1.0 branch (or your own fork, if you prefer). Once complete, make a new minor release of your pipeline.

For instructions on how to merge this PR, please see the template sync documentation.

For more information about this release of nf-core/tools, please see the v4.1.0 release page.

Note

Since nf-core/tools 3.5.0, older template update PRs will not be automatically closed, but will remain open in your pipeline repository. Older template PRs will be automatically closed once a newer template PR has been merged.

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github-actions Bot commented Sep 16, 2026 •

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nf-core pipelines lint overall result: Passed ✅

Posted for pipeline commit e65f72c

+| ✅ 202 tests passed       |+
#| ❔  10 tests were ignored |#
Details

❔ Tests ignored:

  • files_exist - File is ignored: .github/workflows/linting_comment.yml
  • files_exist - File is ignored: tests/default.nf.test
  • nextflow_config - Config default ignored: params.fastq_screen_references
  • nf_test_content - nf_test_content
  • files_unchanged - File ignored due to lint config: .github/workflows/branch.yml
  • files_unchanged - File ignored due to lint config: .github/workflows/linting.yml
  • files_unchanged - File ignored due to lint config: assets/nf-core-seqinspector_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-seqinspector_logo_light.png
  • files_unchanged - File ignored due to lint config: docs/images/nf-core-seqinspector_logo_dark.png
  • multiqc_config - multiqc_config

✅ Tests passed:

Run details

  • nf-core/tools version 4.1.0
  • Run at 2026-09-16 08:57:32

@nf-core nf-core deleted a comment from github-actions Bot Sep 16, 2026
@maxulysse
maxulysse merged commit e42742b into dev Sep 16, 2026
21 checks passed
@maxulysse
maxulysse deleted the nf-core-template-merge-4.1.0 branch September 16, 2026 09:08
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