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biom-format: add build-biom-format.yml for riscv64 wheels - #1791

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luhenry merged 2 commits into
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biom-format
Sep 12, 2026
Merged

luhenry merged 2 commits into
mainfrom
biom-format

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@luhenry luhenry commented Sep 11, 2026

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Compiles three small Cython extensions (biom._filter, biom._transform, biom._subsample) for the Biological Observation Matrix format. Upstream publishes no riscv64 wheel.

Mirrors upstream's wheels.yml.

Differs from upstream

  • Pins numpy/scipy/pandas/h5py to our registry wheels via PIP_ONLY_BINARY - avoids pip picking a PyPI sdist-only release.

Matrix: cp314t builds but skips tests - pandas ships no cp314t wheel anywhere.

Testing

  • same as upstream

License: OK

luhenry added a commit that referenced this pull request Sep 11, 2026
np.in1d was deprecated since numpy 1.25 and removed entirely by the numpy
our registry ships; np.isin is its documented drop-in replacement. Real
compatibility fix, not riscv64-specific -- any user installing this wheel
against a current numpy hits the same AttributeError.
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luhenry merged commit 0b2aa84 into main Sep 12, 2026
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luhenry deleted the biom-format branch September 12, 2026 19:29
@luhenry luhenry linked an issue Sep 12, 2026 that may be closed by this pull request
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biom-format riscv64 support

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