Work around colons in reference names (GRCh38 HLA).#708

Merged

daviesrob merged 9 commits intosamtools:developfrom

jkbonfield:HLA_fix

May 31, 2019

Commits on May 30, 2019

Work around colons in reference names (GRCh38 HLA).

jkbonfield
authored and
daviesrob
committed

Commits on May 31, 2019

Now region parsing fails on ambiguous cases.

jkbonfield
authored and
daviesrob
committed
Added support for brace-quoting of reference names.

jkbonfield
authored and
daviesrob
committed
Major rewrite of hts_parse_region.

jkbonfield
authored and
daviesrob
committed
Changes faidx to use the standard region parser.

jkbonfield
authored and
daviesrob
committed
Changed *_parse_region functions to use 64-bit coords.

jkbonfield
authored and
daviesrob
committed
Avoid warning from gcc8 about memcpy overflow

jkbonfield
authored and
daviesrob
committed
Expand hts_parse_region documentation in the header file.
daviesrob
committed
Update hts_reglist_create() to use hts_parse_region()
daviesrob
committed