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Update legacy_anndata.py #320

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Update legacy_anndata.py #320

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Update legacy_anndata.py
Liripo Sep 4, 2025
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[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Sep 4, 2025
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10 changes: 8 additions & 2 deletions src/spatialdata_io/converters/legacy_anndata.py
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Original file line number Diff line number Diff line change
Expand Up @@ -293,7 +293,10 @@ def from_legacy_anndata(adata: AnnData) -> SpatialData:
"tissue_hires_scalef is required when an the hires image is present"
)
hires_image = Image2DModel.parse(
hires, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_hires": Identity()}
hires,
dims=("y", "x", "c"),
transformations={f"{dataset_id}_downscaled_hires": Identity()},
rgb=None,
)
images[f"{dataset_id}_hires_image"] = hires_image

Expand All @@ -306,7 +309,10 @@ def from_legacy_anndata(adata: AnnData) -> SpatialData:
"tissue_lowres_scalef is required when an the lowres image is present"
)
lowres_image = Image2DModel.parse(
lowres, dims=("y", "x", "c"), transformations={f"{dataset_id}_downscaled_lowres": Identity()}
lowres,
dims=("y", "x", "c"),
transformations={f"{dataset_id}_downscaled_lowres": Identity()},
rgb=None,
)
images[f"{dataset_id}_lowres_image"] = lowres_image

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