Add downloadable cells dataset via scverse-misc#1149
Open
timtreis wants to merge 4 commits into
Open
Conversation
Expose spatialdata.datasets.cells() alongside blobs/raccoon. It downloads the cells example dataset and loads it as a SpatialData object, reusing the scverse-misc datasets infrastructure (parse_registry + fetch with the built-in spatialdata loader) rather than reimplementing a downloader. - ship src/spatialdata/datasets.yaml registry (base_url + cells.zip sha256) - add scverse-misc[datasets]>=0.0.10 dependency - bump requires-python and ruff target to 3.12 (scverse-misc requires >=3.12) - update CI matrix 3.11 -> 3.12 - docs + network-free registry test and a slow download test Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
for more information, see https://pre-commit.ci
timtreis
force-pushed
the
add-cells-dataset
branch
from
7d60be6 to
c453909
Compare
Codecov Report✅ All modified and coverable lines are covered by tests. Additional details and impacted files@@ Coverage Diff @@
## main #1149 +/- ##
==========================================
+ Coverage 92.43% 92.44% +0.01%
==========================================
Files 51 51
Lines 7815 7826 +11
==========================================
+ Hits 7224 7235 +11
Misses 591 591
🚀 New features to boost your workflow:
|
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
1 participant
Add this suggestion to a batch that can be applied as a single commit.This suggestion is invalid because no changes were made to the code.Suggestions cannot be applied while the pull request is closed.Suggestions cannot be applied while viewing a subset of changes.Only one suggestion per line can be applied in a batch.Add this suggestion to a batch that can be applied as a single commit.Applying suggestions on deleted lines is not supported.You must change the existing code in this line in order to create a valid suggestion.Outdated suggestions cannot be applied.This suggestion has been applied or marked resolved.Suggestions cannot be applied from pending reviews.Suggestions cannot be applied on multi-line comments.Suggestions cannot be applied while the pull request is queued to merge.Suggestion cannot be applied right now. Please check back later.
Summary
Exposes
spatialdata.datasets.cells()alongsideblobs/raccoon. It downloads thecellsexample dataset and loads it as aSpatialDataobject.Dataset fetching is delegated to
scverse-misc[datasets](>=0.1.0, the first released version with the datasets feature). The registry shipped insrc/spatialdata/datasets.yamlis parsed and fetched (downloaded, hash-verified, cached, loaded) at call time.The actual download is exercised by
test_cells_download, markedslow; the network-freetest_cells_registryvalidates the shipped registry on every run.