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Pull requests: snakemake-workflows/dna-seq-varlociraptor

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Pull requests list

chore(master): release 6.6.2 autorelease: pending
#443 opened Mar 29, 2026 by github-actions Bot Loading…
feat: cnv calling
#441 opened Mar 25, 2026 by schrins Contributor Loading…
18
feat: add parameter to make bqsr optional
#440 opened Mar 25, 2026 by BiancaStoecker Loading…
18
feat: support per-group scenario templates
#435 opened Mar 17, 2026 by johanneskoester Contributor Loading…
9
feat: add varpubs
#414 opened Jan 16, 2026 by FelixMoelder Contributor Loading…
17
fix: fusion calling parameters and resources
#408 opened Dec 11, 2025 by dlaehnemann Member • Draft
1
feat: output cram instead bam
#406 opened Dec 8, 2025 by FelixMoelder Contributor • Draft
1
perf: autobump conda envs
#395 opened Oct 12, 2025 by johanneskoester Contributor Loading…
110
chore: test on arm
#392 opened Oct 4, 2025 by johanneskoester Contributor Loading…
5
feat: integrate hla typing with orthanq
#391 opened Sep 20, 2025 by johanneskoester Contributor Loading…
23
feat: add complement events
#382 opened Jun 6, 2025 by dlaehnemann Member • Draft
17
Add: Manhatten Plot
#374 opened Apr 29, 2025 by BenOrl Contributor • Draft
1
feat: add savana for SV calling
#373 opened Mar 28, 2025 by johanneskoester Contributor Loading…
9
feat: impact graphs
#361 opened Feb 21, 2025 by FelixMoelder Contributor • Draft
7
feat!: download pangenome indexes from HPRC
#356 opened Feb 5, 2025 by johanneskoester Contributor Loading…
1
fix: default scenario.yaml full universe in normal sample and proper …
#326 opened Sep 11, 2024 by dlaehnemann Member Loading…
feat: download alphamissense scores
#307 opened Jun 10, 2024 by FelixMoelder Contributor • Draft
feat: add group-by-variant-oncoprint
#237 opened May 15, 2023 by johanneskoester Contributor Loading…
feat: support skipping of any annotation based filtering
#219 opened Mar 13, 2023 by johanneskoester Contributor Loading…
feat: normalize candidate calls in case of multiple samples in a calling group
#99 opened Nov 30, 2021 by johanneskoester Contributor Loading…
perf: skip adapter trimming if nothing specified in unit sheet inprogress
#93 opened Oct 9, 2021 by johanneskoester Contributor Loading…
Adjust get_read_group for multi sample config.
#59 opened Nov 20, 2020 by christopher-schroeder Contributor Loading…
4
Gridss
#15 opened Mar 25, 2020 by christopher-schroeder Contributor Loading…
5
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