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perf(align): stitch into the transcript in place instead of cloning per node CI #621: Pull request #264 opened by BenjaminDEMAILLE
6m 25s BenjaminDEMAILLE:perf/stitch-in-place2
BenjaminDEMAILLE:perf/stitch-in-place2
6m 25s
feat(bam): --outBAMsortingBinsN, spilling the coordinate sort to disk bins CI #620: Pull request #263 opened by BenjaminDEMAILLE
6m 23s BenjaminDEMAILLE:perf/bam-incremental-spill
BenjaminDEMAILLE:perf/bam-incremental-spill
6m 23s
perf(index): route tandem-repeat-heavy genomes to the in-memory SA path CI #619: Pull request #262 opened by BenjaminDEMAILLE
6m 20s BenjaminDEMAILLE:perf/sa-path-routing
BenjaminDEMAILLE:perf/sa-path-routing
6m 20s
perf(pipeline): size alignment batches so the result vector stays off the arena path CI #618: Pull request #261 opened by BenjaminDEMAILLE
6m 9s BenjaminDEMAILLE:perf/batch-sizing
BenjaminDEMAILLE:perf/batch-sizing
6m 9s
perf(align): resolve the genome storage once per extension and junction scan CI #617: Pull request #257 synchronize by BenjaminDEMAILLE
6m 38s BenjaminDEMAILLE:perf/genome-seqview
BenjaminDEMAILLE:perf/genome-seqview
6m 38s
perf(align): resolve the genome storage once per extension and junction scan CI #616: Pull request #257 synchronize by BenjaminDEMAILLE
6m 15s BenjaminDEMAILLE:perf/genome-seqview
BenjaminDEMAILLE:perf/genome-seqview
6m 15s
chore(deps): bump re-actors/alls-green from 1.2.2 to 1.3.0 CI #615: Pull request #260 opened by dependabot Bot
7m 5s dependabot/github_actions/re-actors/alls-green-1.3.0
dependabot/github_actions/re-actors/alls-green-1.3.0
7m 5s
chore(deps): bump noodles from 0.113.0 to 0.116.0 CI #614: Pull request #259 opened by dependabot Bot
6m 29s dependabot/cargo/noodles-0.116.0
dependabot/cargo/noodles-0.116.0
6m 29s
chore(deps): bump libdeflater from 1.25.2 to 1.26.0 CI #613: Pull request #258 opened by dependabot Bot
5m 15s dependabot/cargo/libdeflater-1.26.0
dependabot/cargo/libdeflater-1.26.0
5m 15s
cargo in /. - Update #1544735314 Dependabot Updates #122: by dependabot Bot
55s main
main
55s
github_actions in /. - Update #1544735323 Dependabot Updates #121: by dependabot Bot
1m 26s main
main
1m 26s
perf(align): resolve the genome storage once per extension and junction scan CI #612: Pull request #257 opened by BenjaminDEMAILLE
6m 36s BenjaminDEMAILLE:perf/genome-seqview
BenjaminDEMAILLE:perf/genome-seqview
6m 36s
perf(align): memoize the junction-position scan inside stitchWindowAligns CI #611: Pull request #256 opened by BenjaminDEMAILLE
6m 29s BenjaminDEMAILLE:perf/junction-memo
BenjaminDEMAILLE:perf/junction-memo
6m 29s
test(determinism): lock output against map iteration order (#210) CI #610: Pull request #242 synchronize by BenjaminDEMAILLE
6m 6s audit/sj-iteration-order
audit/sj-iteration-order
6m 6s
docs(roadmap): record where the port stands, measured CI #609: Pull request #255 opened by BenjaminDEMAILLE
5m 45s docs/port-status
docs/port-status
5m 45s
fix(align): a soft-clipped variant of a pair is not a second locus CI #608: Pull request #254 opened by BenjaminDEMAILLE
6m 25s fix/pair-subset-loci
fix/pair-subset-loci
6m 25s
test: yeast-tier differential in a minute, and a SAM agreement tool CI #607: Pull request #253 opened by BenjaminDEMAILLE
6m 27s test/yeast-tier
test/yeast-tier
6m 27s
fix(filter): take outFilterMismatchNoverLmax over the mapped length CI #606: Pull request #252 opened by BenjaminDEMAILLE
6m 44s fix/mismatch-nover-lmax
fix/mismatch-nover-lmax
6m 44s
docs: retire CLAUDE.md, keeping what is still true CI #605: Pull request #251 opened by BenjaminDEMAILLE
7m 16s docs/retire-claude-md
docs/retire-claude-md
7m 16s
ci: opt-in benchmark workflow, micro and end-to-end CI #604: Pull request #250 opened by BenjaminDEMAILLE
6m 52s ci/speed-benchmarks
ci/speed-benchmarks
6m 52s
ci: opt-in large-dataset differential against STAR CI #603: Pull request #249 opened by BenjaminDEMAILLE
5m 32s ci/large-dataset-tests
ci/large-dataset-tests
5m 32s
bench: add a divan harness and the first hot-path benchmarks CI #602: Pull request #248 opened by BenjaminDEMAILLE
6m 24s feat/bench-harness
feat/bench-harness
6m 24s
fix(stats): paired-end unmapped reads split between too short and other CI #601: Pull request #247 opened by BenjaminDEMAILLE
6m 40s fix/unmapped-other-bucket
fix/unmapped-other-bucket
6m 40s
chore(deps): bump thiserror from 2.0.19 to 2.0.20 CI #600: Pull request #230 synchronize by dependabot Bot
10m 51s dependabot/cargo/thiserror-2.0.20
dependabot/cargo/thiserror-2.0.20
10m 51s
chore(deps): bump bstr from 1.13.0 to 1.13.1 CI #599: Pull request #229 synchronize by dependabot Bot
12m 16s dependabot/cargo/bstr-1.13.1
dependabot/cargo/bstr-1.13.1
12m 16s