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Pull requests: scverse/rustar-aligner
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perf(index): route tandem-repeat-heavy genomes to the in-memory SA path
#262
opened Aug 29, 2026 by
BenjaminDEMAILLE
Contributor
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perf(pipeline): size alignment batches so the result vector stays off the arena path
#261
opened Aug 29, 2026 by
BenjaminDEMAILLE
Contributor
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chore(deps): bump re-actors/alls-green from 1.2.2 to 1.3.0
dependencies
Pull requests/issues that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#260
opened Aug 28, 2026 by
dependabot
Bot
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chore(deps): bump noodles from 0.113.0 to 0.116.0
dependencies
Pull requests/issues that update a dependency file
rust
Pull requests that update rust code
#259
opened Aug 28, 2026 by
dependabot
Bot
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chore(deps): bump libdeflater from 1.25.2 to 1.26.0
dependencies
Pull requests/issues that update a dependency file
rust
Pull requests that update rust code
#258
opened Aug 28, 2026 by
dependabot
Bot
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perf(align): resolve the genome storage once per extension and junction scan
#257
opened Aug 28, 2026 by
BenjaminDEMAILLE
Contributor
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perf(align): memoize the junction-position scan inside stitchWindowAligns
#256
opened Aug 28, 2026 by
BenjaminDEMAILLE
Contributor
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docs(roadmap): record where the port stands, measured
#255
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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fix(align): a soft-clipped variant of a pair is not a second locus
#254
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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test: yeast-tier differential in a minute, and a SAM agreement tool
#253
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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fix(filter): take outFilterMismatchNoverLmax over the mapped length
#252
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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docs: retire CLAUDE.md, keeping what is still true
#251
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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bench: add a divan harness and the first hot-path benchmarks
#248
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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fix(stats): paired-end unmapped reads split between too short and other
#247
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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docs: record dependency decisions in DEPENDENCIES.md
#246
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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test(solo): a fixture the CellRanger flags can fail (#172)
#243
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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test(determinism): lock output against map iteration order (#210)
#242
opened Aug 27, 2026 by
BenjaminDEMAILLE
Contributor
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fix(solo): port STAR's actual CellRanger4 clip rules
#241
opened Aug 26, 2026 by
BenjaminDEMAILLE
Contributor
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fix(solo): --soloBarcodeMate 1 requires clipping the barcode off that mate
#240
opened Aug 26, 2026 by
BenjaminDEMAILLE
Contributor
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feat(cli): parameter files, genome version check, and a shell-run readFilesCommand
#239
opened Aug 26, 2026 by
BenjaminDEMAILLE
Contributor
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chore(ci): extend dependabot to docs/ npm and Docker, group minor/patch bumps
#235
opened Aug 23, 2026 by
BenjaminDEMAILLE
Contributor
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chore(deps): bump docker/setup-buildx-action from 4.2.0 to 4.3.0
dependencies
Pull requests/issues that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#234
opened Aug 21, 2026 by
dependabot
Bot
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feat(degnorm): DegNorm-style transcript degradation normalization
#232
opened Aug 20, 2026 by
BenjaminDEMAILLE
Contributor
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chore(deps): bump Swatinem/rust-cache from 2.9.1 to 2.9.2
dependencies
Pull requests/issues that update a dependency file
github_actions
Pull requests that update GitHub Actions code
#231
opened Aug 14, 2026 by
dependabot
Bot
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